snRNA-seq of human optic nerve and optic nerve head - all cells

Main

Cell Metadata

GABAergic

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SLC6A1, GAD1
Canonical Marker Genes: unknown
Rationale: Predicted as GABAergic amacrine cells based on human retina cell atlas reference using scArches
Rationale DOI: https://doi.org/10.1101/2023.11.07.566105

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SLC6A1, GAD1
Canonical Marker Genes: unknown
Rationale: Predicted as GABAergic amacrine cells based on human retina cell atlas reference using scArches
Rationale DOI: https://doi.org/10.1101/2023.11.07.566105

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools