snRNA-seq of human optic nerve and optic nerve head - all cells

Main

Cell Metadata

Pigmented_cell_2

Ontology Term: pigmented epithelial cellCL:0000529
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: neurecto-epithelial cellCL:0000710
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MAMDC2, PAX6, ABCA4, AC010086.3
Canonical Marker Genes: PAX6, ABCA4
Rationale: Annotated by the mark gene MAMDC2, PAX6, ABCA4 and AC010086.3

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: pigmented epithelial cellCL:0000529
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: neurecto-epithelial cellCL:0000710
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MAMDC2, PAX6, ABCA4, AC010086.3
Canonical Marker Genes: PAX6, ABCA4
Rationale: Annotated by the mark gene MAMDC2, PAX6, ABCA4 and AC010086.3

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools