snRNA-seq of human optic nerve and optic nerve head - all cells
Cell Metadata
Cone_S
- Ontology Term
- S cone cellCL:0003050
- SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.
- S cone, S-(short-wavelength sensitive) cone, S-cone photoreceptor, S-cone, short wavelength sensitive cone, short- (S) wavelength-sensitive cone, short-wavelength sensitive cone, short-wavelength-sensitive (S) cone
- CategoryClass of which the cell type is a subclass.
- retinal cone cellCL:0000573
- Ontology AssessmentDisagreements with any aspect of the Cell Ontology.
- —
- Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.
- OPN1SW
- Canonical Marker Genes
- OPN1SW
- Rationale
- S Cone (short wavelength - cone) is one type of Cone cells. The marker for S Cone is OPN1SW.
- Rationale DOI
- https://doi.org/10.1101/2023.11.07.566105
Inherited from author_cell_type
- Set of Labels Description
- We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
- Annotation Method
- both
- Algorithm Name
- scVI
- Algorithm Version
- scvi-tools 1.3.0
- Algorithm URL
- https://github.com/scverse/scvi-tools