Cell Annotation Platform
v1
Single cell atlas of the human optic nerve
snRNA-seq of human optic nerve and optic nerve head - all cells
Sign In / Join
snRNA-seq of human optic nerve and optic nerve head - all cells
Main
Summary
Feedback Received
Cell Metadata
author_cell_type
Molecular Data
Download Dataset
Mast_cell
Ontology Term
mast cell
CL:0000097
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
histaminocyte, labrocyte, mastocyte
Category
Class of which the cell type is a subclass.
myeloid leukocyte
CL:0000766
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
SLC24A3
,
KIT
Canonical Marker Genes
unknown
Rationale
Annotated by the marker gene
Inherited from author_cell_type
Set of Labels Description
We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method
both
Algorithm Name
scVI
Algorithm Version
scvi-tools 1.3.0
Algorithm URL
https://github.com/scverse/scvi-tools