snRNA-seq of human optic nerve and optic nerve head - all cells

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Cell Metadata

Venule_postcapillary

Ontology Term: endothelial cell of venuleCL:1000414
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: endothelial cell of postcapillary venule
Category Class of which the cell type is a subclass.: blood vessel endothelial cellCL:0000071
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PKHD1L1, MMRN1
Canonical Marker Genes: PKHD1L1, MMRN1
Rationale: An endothelial cell sub class that expresses PKHD1L1 and MMRN1
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: endothelial cell of venuleCL:1000414
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: endothelial cell of postcapillary venule
Category Class of which the cell type is a subclass.: blood vessel endothelial cellCL:0000071
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PKHD1L1, MMRN1
Canonical Marker Genes: PKHD1L1, MMRN1
Rationale: An endothelial cell sub class that expresses PKHD1L1 and MMRN1
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools