snRNA-seq of human optic nerve and optic nerve head - all cells

Main

Cell Metadata

MG_reactive

Ontology Term: Mueller cellCL:0000636
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Muller glia, Muller cell, Müller cell
Category Class of which the cell type is a subclass.: retinal cellCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: RLBP1, HS6ST3
Canonical Marker Genes: RLBP1, GFAP
Rationale: A muller glia sub class that expresses RLBP1 and higher GFAP

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: Mueller cellCL:0000636
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Muller glia, Muller cell, Müller cell
Category Class of which the cell type is a subclass.: retinal cellCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: RLBP1, HS6ST3
Canonical Marker Genes: RLBP1, GFAP
Rationale: A muller glia sub class that expresses RLBP1 and higher GFAP

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools