snRNA-seq of human optic nerve and optic nerve head - all cells

Microglia_CENPP+

Ontology Term

microglial cellCL:0000129

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

microglia CENPP+

Category

Class of which the cell type is a subclass.

glial cellCL:0000125

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CD74, CENPP

Canonical Marker Genes

CD74

Rationale

Annotated by the marker CD74 and CENPP

Inherited from author_cell_type

Set of Labels Description

We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

scvi-tools 1.3.0

Algorithm URL

https://github.com/scverse/scvi-tools