snRNA-seq of human optic nerve and optic nerve head - all cells

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Cell Metadata

RGC_MG_ON

Ontology Term: midget ganglion cell of retinaCL:4023188
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: retinal ganglion cellCL:0000740
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: EBF2, SLIT3
Canonical Marker Genes: TPBG
Rationale: Predicted as ON midget RGC based on human retina cell atlas reference using scArches
Rationale DOI: https://doi.org/10.1101/2023.11.07.566105

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: midget ganglion cell of retinaCL:4023188
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: retinal ganglion cellCL:0000740
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: EBF2, SLIT3
Canonical Marker Genes: TPBG
Rationale: Predicted as ON midget RGC based on human retina cell atlas reference using scArches
Rationale DOI: https://doi.org/10.1101/2023.11.07.566105

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools