snRNA-seq of human optic nerve and optic nerve head - all cells

Main

Cell Metadata

Schwann_cell_myelinating

Ontology Term: myelinating Schwann cellCL:0000218
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: myelinating Schwann cell
Category Class of which the cell type is a subclass.: Schwann cellCL:0002573
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BCAS1, MLIP, MBP, GALNT17, PRX
Canonical Marker Genes: BCAS1, MBP, GALNT17, PRX
Rationale: This myelinating Schwann cell sub-class is annotated by the marker BCAS1, MLIP, MBP, GALNT17, and PRX
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: myelinating Schwann cellCL:0000218
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: myelinating Schwann cell
Category Class of which the cell type is a subclass.: Schwann cellCL:0002573
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BCAS1, MLIP, MBP, GALNT17, PRX
Canonical Marker Genes: BCAS1, MBP, GALNT17, PRX
Rationale: This myelinating Schwann cell sub-class is annotated by the marker BCAS1, MLIP, MBP, GALNT17, and PRX
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools