snRNA-seq of human optic nerve and optic nerve head - all cells

Fibro_dura

Ontology Term

fibroblastCL:0000057

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

dura fibroblast cell

Category

Class of which the cell type is a subclass.

stromal cellCL:0000499

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

SLC47A1, THSD4, BICC1

Canonical Marker Genes

unknown

Rationale

A fibroblast sub cluster that expresses SLC47A1 and THSD4

Inherited from author_cell_type

Set of Labels Description

We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

scvi-tools 1.3.0

Algorithm URL

https://github.com/scverse/scvi-tools