snRNA-seq of human optic nerve and optic nerve head - all cells

Main

Cell Metadata

Melanocyte

Ontology Term: melanocyteCL:0000148
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: melanophore
Category Class of which the cell type is a subclass.: pigment cellCL:0000147
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PMEL, PAX3
Canonical Marker Genes: PMEL, PAX3
Rationale: Annotated by the markers PMEL and PAX3
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: melanocyteCL:0000148
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: melanophore
Category Class of which the cell type is a subclass.: pigment cellCL:0000147
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PMEL, PAX3
Canonical Marker Genes: PMEL, PAX3
Rationale: Annotated by the markers PMEL and PAX3
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools