snRNA-seq of human optic nerve and optic nerve head - endothelial cells

Main

Cell Metadata

Capillary

Ontology Term: capillary endothelial cellCL:0002144
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: capillary endothelial cell
Category Class of which the cell type is a subclass.: squamous endothelial cellCL:0002653
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BTNL9
Canonical Marker Genes: BTNL9
Rationale: An endothelial sub class that expresses BTNL9 but not PLVAP or CA4.

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression.
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: capillary endothelial cellCL:0002144
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: capillary endothelial cell
Category Class of which the cell type is a subclass.: squamous endothelial cellCL:0002653
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BTNL9
Canonical Marker Genes: BTNL9
Rationale: An endothelial sub class that expresses BTNL9 but not PLVAP or CA4.

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression.
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools