snRNA-seq of human optic nerve and optic nerve head - endothelial cells

Main

Cell Metadata

Vein/Venule

Ontology Term: blood vessel endothelial cellCL:0000071
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: venous endothelial cell, venular endothelial cell
Category Class of which the cell type is a subclass.: endothelial cell of vascular treeCL:0002139
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CDH11, PECAM1, FLT1
Canonical Marker Genes: VEGFC, PECAM1
Rationale: An endothelial cell sub class that expresses CDH11

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression.
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: blood vessel endothelial cellCL:0000071
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: venous endothelial cell, venular endothelial cell
Category Class of which the cell type is a subclass.: endothelial cell of vascular treeCL:0002139
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CDH11, PECAM1, FLT1
Canonical Marker Genes: VEGFC, PECAM1
Rationale: An endothelial cell sub class that expresses CDH11

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression.
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools