snRNA-seq of human optic nerve and optic nerve head - fibroblasts
Fibro_arachnoid
- Ontology Term
- fibroblastCL:0000057
- SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.
- arachnoid fibroblast cell
- CategoryClass of which the cell type is a subclass.
- stromal cellCL:0000499
- Ontology AssessmentDisagreements with any aspect of the Cell Ontology.
- —
- Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.
- CEMIP, PKP2, BICC1
- Canonical Marker Genes
- unknown
- Rationale
- A fibroblast sub cluster that expresses CEMIP and PKP2
Inherited from author_cell_type
- Set of Labels Description
- We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression
- Annotation Method
- both
- Algorithm Name
- scVI
- Algorithm Version
- scvi-tools 1.3.0
- Algorithm URL
- https://github.com/scverse/scvi-tools