HCA Gut Cell Atlas v1 Myeloid Lineage

Main

Cell Metadata

DC Monocyte derived dendritic cell (MO DC)

Ontology Term: monocyte-derived dendritic cellCL:0011031
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: MDDC cell
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MSR1, NPR2
Canonical Marker Genes: MSR1, CD1A, CCR2
Rationale: Shows MSR1, NPR2, and monocyte-to-DC transition markers, defining monocyte-derived dendritic cells arising under inflammatory differentiation
Rationale DOI: 10.1016/j.cell.2019.06.029

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: monocyte-derived dendritic cellCL:0011031
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: MDDC cell
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MSR1, NPR2
Canonical Marker Genes: MSR1, CD1A, CCR2
Rationale: Shows MSR1, NPR2, and monocyte-to-DC transition markers, defining monocyte-derived dendritic cells arising under inflammatory differentiation
Rationale DOI: 10.1016/j.cell.2019.06.029

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools