HCA Gut Cell Atlas v1 Lymphoid Lineage

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Cell Metadata

GC B Light Zone

Ontology Term: centrocyteCL:0009111
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: centrocyte, B GC/LZ
Category Class of which the cell type is a subclass.: germinal center B cellCL:0000844
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BANK1, TNFRSF13C, CD83
Canonical Marker Genes: CD83, CXCR5, BCL6
Rationale: BANK1 is found in all subsets annotated as LZ, TNFRSF13C supports in some

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: centrocyteCL:0009111
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: centrocyte, B GC/LZ
Category Class of which the cell type is a subclass.: germinal center B cellCL:0000844
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BANK1, TNFRSF13C, CD83
Canonical Marker Genes: CD83, CXCR5, BCL6
Rationale: BANK1 is found in all subsets annotated as LZ, TNFRSF13C supports in some

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools