HCA Gut Cell Atlas v1 Lymphoid Lineage

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Cell Metadata

ILC3

Ontology Term: group 3 innate lymphoid cell, humanCL:0001078
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: ILC3
Category Class of which the cell type is a subclass.: innate lymphoid cellCL:0001065
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: KRT86, RORC, IL7R
Canonical Marker Genes: RORC, IL23R, IL22
Rationale: KRT86, RORC, IL7R and IL23R point to strong ILC3 signature, while some nearby subclusters show a more ILC or ILC2 tilt

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: group 3 innate lymphoid cell, humanCL:0001078
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: ILC3
Category Class of which the cell type is a subclass.: innate lymphoid cellCL:0001065
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: KRT86, RORC, IL7R
Canonical Marker Genes: RORC, IL23R, IL22
Rationale: KRT86, RORC, IL7R and IL23R point to strong ILC3 signature, while some nearby subclusters show a more ILC or ILC2 tilt

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools