Cell Annotation Platform
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v2
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons | CAP
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Main
Summary
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Cell Metadata
class
subclass
supertype
cluster
063 STR D1 Sema5a Gaba
Ontology Term
direct pathway medium spiny neuron
CL:4023026
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
lateral ganglionic eminence derived neuron
CL:4023035
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
Rbp1
,
Gpr88
,
Alk
Canonical Marker Genes
unknown
Rationale
NA
Inherited from subclass
Set of Labels Description
The coarse level of cell type definition in the mouse whole brain taxonomy. All cells within a supertype belong to the same subclass. Subclass groups together related supertypes.
Annotation Method
manual
Molecular Data
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