Hinte LTSS 2024 — abdominal subcutaneous adipose tissue

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Cell Metadata

Adipo

Ontology Term: subcutaneous adipocyteCL:0002521
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: subcutaneous fat cell
Category Class of which the cell type is a subclass.: connective tissue cellCL:0002320
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: GPAM
Canonical Marker Genes: GPAM
Rationale: Marker genes for each cell population in the human WAT dataset (Extended Data Fig. 3a of publication). Based on previously described markers from from Emont et al. 2022 (PMID: 35296864), Massier et al 2023 (PMID: 36922516), Maniyadath (PMID: 36889280), Sárvári et al 2021 (PMID: 33378646), Shan et al 2020 (PMID: 33139957), Schwalie et al (PMID: 29925944).

Set of Labels Description: Annotation of all broad canonical cell populations present in AT were based on previously described markers from Emont et al. 2022 (PMID: 35296864), Massier et al 2023 (PMID: 36922516), Maniyadath (PMID: 36889280), Sárvári et al 2021 (PMID: 33378646), Shan et al 2020 (PMID: 33139957), Schwalie et al (PMID: 29925944).
Annotation Method: manual

Ontology Term: subcutaneous adipocyteCL:0002521
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: subcutaneous fat cell
Category Class of which the cell type is a subclass.: connective tissue cellCL:0002320
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: GPAM
Canonical Marker Genes: GPAM
Rationale: Marker genes for each cell population in the human WAT dataset (Extended Data Fig. 3a of publication). Based on previously described markers from from Emont et al. 2022 (PMID: 35296864), Massier et al 2023 (PMID: 36922516), Maniyadath (PMID: 36889280), Sárvári et al 2021 (PMID: 33378646), Shan et al 2020 (PMID: 33139957), Schwalie et al (PMID: 29925944).

Set of Labels Description: Annotation of all broad canonical cell populations present in AT were based on previously described markers from Emont et al. 2022 (PMID: 35296864), Massier et al 2023 (PMID: 36922516), Maniyadath (PMID: 36889280), Sárvári et al 2021 (PMID: 33378646), Shan et al 2020 (PMID: 33139957), Schwalie et al (PMID: 29925944).
Annotation Method: manual