Lazarescu 2025 — abdominal subcutaneous adipose tissue

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Cell Metadata

mesenchymal stem cell of adipose tissue

Ontology Term: mesenchymal stem cell of adipose tissueCL:0002570
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: mesenchymal stem cell of adipose, fibro/adipogenic progenitor, preadipocyte
Category Class of which the cell type is a subclass.: precursor cellCL:0011115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PDGFRA
Canonical Marker Genes: PDGFRA
Rationale: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.

Set of Labels Description: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.
Annotation Method: both
Algorithm Name: CellTypist R package
Algorithm Version: 2
Algorithm URL: https://www.cell.com/cell/fulltext/S0092-8674(23)01312-0

Ontology Term: mesenchymal stem cell of adipose tissueCL:0002570
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: mesenchymal stem cell of adipose, fibro/adipogenic progenitor, preadipocyte
Category Class of which the cell type is a subclass.: precursor cellCL:0011115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PDGFRA
Canonical Marker Genes: PDGFRA
Rationale: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.

Set of Labels Description: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.
Annotation Method: both
Algorithm Name: CellTypist R package
Algorithm Version: 2
Algorithm URL: https://www.cell.com/cell/fulltext/S0092-8674(23)01312-0