Lazarescu 2025 — abdominal subcutaneous adipose tissue

Main

Cell Metadata

dendritic cell

Ontology Term: dendritic cellCL:0000451
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: interdigitating cell, veiled cell
Category Class of which the cell type is a subclass.: leukocyteCL:0000738
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLEC9A
Canonical Marker Genes: CLEC9A
Rationale: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.

Set of Labels Description: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.
Annotation Method: both
Algorithm Name: CellTypist R package
Algorithm Version: 2
Algorithm URL: https://www.cell.com/cell/fulltext/S0092-8674(23)01312-0

Ontology Term: dendritic cellCL:0000451
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: interdigitating cell, veiled cell
Category Class of which the cell type is a subclass.: leukocyteCL:0000738
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLEC9A
Canonical Marker Genes: CLEC9A
Rationale: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.

Set of Labels Description: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.
Annotation Method: both
Algorithm Name: CellTypist R package
Algorithm Version: 2
Algorithm URL: https://www.cell.com/cell/fulltext/S0092-8674(23)01312-0