Single-nucleus RNA-seq of Asian Skeletal Muscle Reveals Ancestry-specific Regulatory Programs Across Metabolic States

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Cell Metadata

T cell

Ontology Term: T cellCL:0000084
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: T lymphocyte
Category Class of which the cell type is a subclass.: lymphocyteCL:0000542
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SKAP1, CD3D, CD4, CD8A, IL7R, LTB
Canonical Marker Genes: SKAP1, CD3D, CD4, CD8A, IL7R, LTB
Rationale: Annotated based on canonical T cell markers from snRNA-seq differential expression analysis.

Set of Labels Description: Cell annotations are based on a Level 1 annotation scheme, assigning the most appropriate broad cell type label to each of the 11 clusters identified during integration.
Annotation Method: manual

Ontology Term: T cellCL:0000084
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: T lymphocyte
Category Class of which the cell type is a subclass.: lymphocyteCL:0000542
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SKAP1, CD3D, CD4, CD8A, IL7R, LTB
Canonical Marker Genes: SKAP1, CD3D, CD4, CD8A, IL7R, LTB
Rationale: Annotated based on canonical T cell markers from snRNA-seq differential expression analysis.

Set of Labels Description: Cell annotations are based on a Level 1 annotation scheme, assigning the most appropriate broad cell type label to each of the 11 clusters identified during integration.
Annotation Method: manual