HCA Gut Cell Atlas v1 Lymphoid Lineage

B Memory

Ontology Term: memory B cellCL:0000787
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: memory B cell, Bmem
Category Class of which the cell type is a subclass.: B cellCL:0000236
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD69, SELL, CD27, HLA-DRA
Canonical Marker Genes: CD27, CD80, CD86
Negative Marker Genes Genes expected to be absent, or expressed at a notably low level, in these cells, and whose absence supports the assignment of this cell annotation.: —
Rationale: CD27, HLA-DRA, SELL, and CD69 separated memory B cells from other B subsets

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools