Human Gut Cell Atlas (HGCA) v1 - All Cells

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Cell Metadata

Enterocytes Early

Full Name: Early enterocytes
Closest Ontology Term: enterocyteCL:0000584
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enterocyteCL:0000584
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Since absorptive epithelial cells lay on a continuum, it's not clear if or how we should have subdivisions of epithelial subtypes. We argue it could be useful for high-res compositional analysis to have some type of subdivision.
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FABP4, ALDOB, ANPEP, PRAP1, FABP1
Canonical Marker Genes: ANPEP, ALDOB, FABP1
Rationale: Enterocytes which have developed into absorptive lineage from TA and progenitor subtypes first express ANPEP, ALDOB, and other enzymes

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Full Name: Early enterocytes
Closest Ontology Term: enterocyteCL:0000584
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enterocyteCL:0000584
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Since absorptive epithelial cells lay on a continuum, it's not clear if or how we should have subdivisions of epithelial subtypes. We argue it could be useful for high-res compositional analysis to have some type of subdivision.
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FABP4, ALDOB, ANPEP, PRAP1, FABP1
Canonical Marker Genes: ANPEP, ALDOB, FABP1
Rationale: Enterocytes which have developed into absorptive lineage from TA and progenitor subtypes first express ANPEP, ALDOB, and other enzymes

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools