Human Gut Cell Atlas (HGCA) v1 - All Cells

CD4 Naive

Ontology Term

naive T cellCL:0000898

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

naive CD4 T cell, CD4 Tnaive

Category

Class of which the cell type is a subclass.

CD4-positive, alpha-beta T cellCL:0000624

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CD4, CCR7, LEF1, IL7R, KLF2, S1PR5, SELL

Canonical Marker Genes

CCR7, IL7R, SELL

Rationale

CD4 Naive T cells are defined as CCR7, IL7R, LEF1 and SELL expressing signatures

Inherited from hgca_celltype_v0

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools