Human Gut Cell Atlas (HGCA) v1 - All Cells

CD8 IEL

Ontology Term

intraepithelial lymphocyteCL:0002496

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

IEL

Category

Class of which the cell type is a subclass.

CD8-positive, alpha-beta T cellCL:0000625

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

ITGAE, CD160, KLRC2, KIR2DL4, NCR1, NCR2, NCR3, CD7, CD244

Canonical Marker Genes

ITGAE, CD69, CD160

Rationale

A large cluster of ITGAE high, CD160 exists in the atlas, pointing to resident status. contextualization with radial tissue terms could increase evidence

Inherited from hgca_celltype_v0

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools