Human Gut Cell Atlas (HGCA) v1 - All Cells

Main

Cell Metadata

Plasma IGA

Ontology Term: IgA plasma cellCL:0000987
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Plasma IgA cell
Category Class of which the cell type is a subclass.: plasma cellCL:0000786
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: IGHA
Canonical Marker Genes: IGHA
Rationale: These are easily distinguished from other plasma subsets via IGHA variants

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: IgA plasma cellCL:0000987
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Plasma IgA cell
Category Class of which the cell type is a subclass.: plasma cellCL:0000786
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: IGHA
Canonical Marker Genes: IGHA
Rationale: These are easily distinguished from other plasma subsets via IGHA variants

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools