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Dataset
Organism
Tissue
Disease
Assay
Cells
Multiplexed scRNA-seq of 1.2 million PBMCs from adult lupus samples
Homo sapiens
blood
systemic lupus erythematosus
normal
10x 3' v2
1,263,676
Single cell derived mRNA signals across human kidney tumors - fetal kidney cells
Homo sapiens
kidney
normal
10x 3' v2
27,203
Single cell derived mRNA signals across human kidney tumors - Wilms tumor cells
Homo sapiens
kidney
Wilms tumor
10x 3' v3
4,636
Local and systemic responses to SARS-CoV-2 infection in children and adults - PBMCs
Homo sapiens
blood
normal
COVID-19
post-COVID-19 disorder
10x 5' v1
422,220
Single-cell multi-omics analysis of the immune response in COVID-19
Homo sapiens
blood
COVID-19
normal
respiratory system disorder
10x 3' transcription profiling
647,366
COMBAT project: single cell gene expression data from COVID-19, sepsis and flu patient PBMCs
Homo sapiens
blood
COVID-19
normal
influenza
10x 5' v1
836,148
AIDA Phase 1 Data Freeze v2: Chinese, Indian, Japanese, Korean, Malay, and Thai donors in Japan, Singapore, South Korea, Thailand, and India
Homo sapiens
blood
normal
10x 5' v2
1,265,624
Second Trimester Human Developing Brain Regions and Cortical Areas
Homo sapiens
parietal cortex
prefrontal cortex
primary motor cortex
primary visual cortex
primary somatosensory cortex
temporal cortex
normal
10x 3' v2
457,965
Single-cell eQTL mapping identifies cell type specific genetic control of autoimmune disease
Homo sapiens
blood
normal
10x 3' v2
1,248,980
Skin fibroblasts - Pan-disease fibroblast atlas in skin fibrosis, inflammation, and cancer
Homo sapiens
zone of skin
normal
psoriasis
palmar fibromatosis
systemic sclerosis
keloid
Lyme disease
prurigo nodularis
dermatitis, atopic
cutaneous sclerosis
alopecia areata
basal cell carcinoma
subacute cutaneous lupus erythematosus
sarcoidosis
acne
localized scleroderma
acral lentiginous melanoma
discoid lupus erythematosus
hidradenitis suppurativa
squamous cell carcinoma
drug rash with eosinophilia and systemic symptoms
granuloma annulare
cutaneous melanoma
10x 3' v2
10x 3' v3
10x 5' v2
10x 5' v1
10x 3' v1
337,376
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra - Human Epithelial Cells
Homo sapiens
peripheral zone of prostate
transition zone of prostate
normal
10x 3' v2
24,544
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra - Human Fibromuscular Stromal Cells
Homo sapiens
transition zone of prostate
peripheral zone of prostate
normal
10x 3' v2
2,113
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra - All Human Cells
Homo sapiens
peripheral zone of prostate
transition zone of prostate
normal
10x 3' v2
28,702
Single cell atlas of the human retina - Bipolar cell subclass
Homo sapiens
peripheral region of retina
fovea centralis
macula lutea
macula lutea proper
retina
normal
10x 3' v3
422,542
Single cell atlas of the human retina - Retinal ganglion cell subclass
Homo sapiens
macula lutea
macula lutea proper
peripheral region of retina
fovea centralis
retina
normal
10x 3' v3
99,707
Single cell atlas of the human retina - Amacrine cell subclass
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
retina
normal
10x 3' v3
387,069
Single cell atlas of the human retina - all cells - scRNA-seq
Homo sapiens
fovea centralis
peripheral region of retina
chorioretinal region
retinal neural layer
macula lutea proper
normal
10x 3' v2
10x 3' v3
265,767
Single cell atlas of the human retina - all cells
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
retina
macula lutea proper
normal
10x 3' v3
1,775,529
Single cell atlas of the human retina - Bipolar cell subclass - scRNA-seq
Homo sapiens
fovea centralis
peripheral region of retina
chorioretinal region
retinal neural layer
macula lutea proper
normal
10x 3' v2
10x 3' v3
72,788
Multiplexed scRNA-seq of 1.2 million PBMCs from adult lupus samples
Homo sapiens
blood
systemic lupus erythematosus
normal
10x 3' v2
1,263,676
Single-cell multi-omics analysis of the immune response in COVID-19
Homo sapiens
blood
COVID-19
normal
respiratory system disorder
10x 3' transcription profiling
647,366
Combined single cell and single nuclei RNA-Seq data - Heart Global
Homo sapiens
heart left ventricle
heart right ventricle
apex of heart
interventricular septum
left cardiac atrium
sinoatrial node
right cardiac atrium
atrioventricular node
normal
10x 3' v3
10x 3' v2
10x multiome
704,296
Combined single cell and single nuclei RNA-Seq data - Heart Global
Homo sapiens
heart left ventricle
heart right ventricle
apex of heart
interventricular septum
left cardiac atrium
sinoatrial node
right cardiac atrium
atrioventricular node
normal
10x 3' v3
10x 3' v2
10x multiome
704,296
An Atlas of Cells in the Human Tonsil
Homo sapiens
palatine tonsil
tonsillitis
10x 3' v3
377,963
An Atlas of Cells in the Human Tonsil
Homo sapiens
palatine tonsil
tonsillitis
10x 3' v3
377,963
An Atlas of Cells in the Human Tonsil
Homo sapiens
palatine tonsil
tonsillitis
10x 3' v3
377,963
Charting human development using a multi-endodermal organ atlas and organoid models - Adult duodenum
Homo sapiens
duodenum
normal
10x 3' v2
5,200
Charting human development using a multi-endodermal organ atlas and organoid models - Developing Human Atlas
Homo sapiens
lung
duodenum
ileum
colon
small intestine
epithelium of trachea
stomach
esophagus
body of stomach
jejunum
liver
pyloric antrum
normal
10x 3' v2
10x 3' v3
155,232
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Homo sapiens
ileum
crohns_disease
functional_gastrointestinal_disorder
10x 3' v2
197,281
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Homo sapiens
ileum
crohns_disease
functional_gastrointestinal_disorder
10x 3' v2
197,281
