Human PBMC atlas - DC_DC2 cells

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Cell Metadata

pDC2_FCRLA_SOX4

Full Name: FCRLA/SOX4+ plasmacytoid dendritic cell 2
Closest Ontology Term: plasmacytoid dendritic cellCL:0000784
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: plasmacytoid dendritic cellCL:0000784
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Cluster with canonical pDC2 markers and +FCRLA/SOX4
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FCRLA, SOX4, FKBP11
Canonical Marker Genes: IL3RA, TCF4, IRF7, IRF8, JCHAIN, LILRA4
Rationale: Cluster with canonical pDC2 markers and +FCRLA/SOX4
Rationale DOI: https://doi.org/10.1016/j.isci.2023.107628

Set of Labels Description: Clustering was Leiden based before manual annotation and consensus agreement by multiple authors.
Annotation Method: manual

Full Name: FCRLA/SOX4+ plasmacytoid dendritic cell 2
Closest Ontology Term: plasmacytoid dendritic cellCL:0000784
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: plasmacytoid dendritic cellCL:0000784
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Cluster with canonical pDC2 markers and +FCRLA/SOX4
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FCRLA, SOX4, FKBP11
Canonical Marker Genes: IL3RA, TCF4, IRF7, IRF8, JCHAIN, LILRA4
Rationale: Cluster with canonical pDC2 markers and +FCRLA/SOX4
Rationale DOI: https://doi.org/10.1016/j.isci.2023.107628

Set of Labels Description: Clustering was Leiden based before manual annotation and consensus agreement by multiple authors.
Annotation Method: manual