Human PBMC atlas - TCD4 naive cells

T CD4 naive SOX4 (RTE)

Full Name: CD4+ recent thymic emigrant
Closest Ontology Term: naive thymus-derived CD4-positive, alpha-beta T cellCL:0000895
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: naive thymus-derived CD4-positive, alpha-beta T cellCL:0000895
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: RTE have been reported previously, but here we specify between CD4+ and CD8+ types
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SOX4
Canonical Marker Genes: CD4, CCR7, SELL, LEF1, TCF7
Rationale: RTE have been reported previously, but here we specify between CD4+ and CD8+ types
Rationale DOI: https://doi.org/10.1016/j.immuni.2024.08.019

Set of Labels Description: Clustering was Leiden based before manual annotation and consensus agreement by multiple authors.
Annotation Method: manual