Human PBMC atlas - TCD4 effector and nonnaive cells

T CD4 EM Th1

Ontology Term: T-helper 1 cellCL:0000545
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: effector memory CD4-positive, alpha-beta T cellCL:0000905
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: unknown
Canonical Marker Genes: CD4, GZMA, GZMK, CXCR3
Negative Marker Genes Genes expected to be absent, or expressed at a notably low level, in these cells, and whose absence supports the assignment of this cell annotation.: —
Rationale: Cluster with canonical markers of Th1 cells only

Set of Labels Description: Clustering was Leiden based before manual annotation and consensus agreement by multiple authors.
Annotation Method: manual