Mid Villus Enterocytes
Full Name
- mid villus enterocyte
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.- enterocytes mid villus
Category
Class of which the cell type is a subclass.- enterocyteCL:0000584
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.- GCA supports an intermediate between early and late absorptive colonocytes and enterocytes, based on coexpression of early and late markers and middling positioning on the continuum of epithelia
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.- APOA1, APOC3, ALDOB, ANPEP
Rationale
- Enterocytes partway up the crypt, these display ANPEP and ALDOB alongside APOA1 and APOC3. They are placed clearly in the middle of the enterocyte maturation trajectory.
Inherited from hgca_celltype_v1
- Set of Labels Description
- Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
- Annotation Method
- both
- Algorithm Name
- scIB
- Algorithm Version
- 1.2.1
- Algorithm URL
- https://github.com/theislab/scib
