Healthy and adjacent-to-disease control data from 27 gut single-cell RNAseq datasets were collected and integrated to form v1 of the Human Gut Cell Atlas epithelial lineage
- Dataset Type
- Integrated. The file includes an integrated collection of datasets.
- Total Cells
- 269,780
- assay
- 10x 3' v3 (188,034 cells)10x 3' v2 (75,041 cells)10x 5' v1 (5,347 cells)10x 5' v2 (1,216 cells)10x 5' v3 (142 cells)
- disease
- normal (214,378 cells)Crohn disease (36,634 cells)adenocarcinoma (12,395 cells)colorectal cancer (2,910 cells)neuroendocrine carcinoma (2,775 cells)digestive system disorder (643 cells)enteritis (45 cells)
- organism
- Homo sapiens
- tissue
- ileum (178,040 cells)ascending colon (53,648 cells)duodenum (6,814 cells)transverse colon (5,881 cells)sigmoid colon (5,551 cells)colon (5,448 cells)rectum (5,202 cells)jejunum (3,925 cells)descending colon (2,102 cells)small intestine (1,907 cells)caecum (1,164 cells)vermiform appendix (98 cells)
