Human Gut Cell Atlas (HGCA) v1 - Myeloid Lineage

Cycling Macrophages

Ontology Term: cycling macrophageCL:4033076
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: proliferating macrophage, cycling macrophage
Category Class of which the cell type is a subclass.: macrophageCL:0000235
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: STMN1, C1Q*
Canonical Marker Genes: STMN1, C1Q*
Rationale: Macrophages that are dividing. They keep the macrophage identity through C1QB but bring up cell-cycle genes like STMN1, TUBB, MKI67 and PCNA.

Set of Labels Description: Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
Annotation Method: both
Algorithm Name: scIB
Algorithm Version: 1.2.1
Algorithm URL: https://github.com/theislab/scib