Homeostatic Macrophages
Full Name
- homeostatic tissue resident macrophage
Closest Ontology Term
- tissue-resident macrophageCL:0000864
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.- FOLR2+ tissue resident macrophage
Category
Class of which the cell type is a subclass.- tissue-resident macrophageCL:0000864
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.- —
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.- FOLR2
Canonical Marker Genes
- FOLR2
Rationale
- These are the subset of tissue resident macrophages that have high FOLR2 expression separating them from other spatially well defined subsets.
Inherited from hgca_celltype_v1
- Set of Labels Description
- Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
- Annotation Method
- both
- Algorithm Name
- scIB
- Algorithm Version
- 1.2.1
- Algorithm URL
- https://github.com/theislab/scib
