Human Gut Cell Atlas (HGCA) v1 - Myeloid Lineage

Monocyte Derived Dendritic Cells (MO DC)

Ontology Term: monocyte-derived dendritic cellCL:0011031
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: MDDC cell
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MSR1, NPR2
Canonical Marker Genes: MSR1, CD1A, CCR2
Rationale: Shows MSR1, NPR2, and monocyte-to-DC transition markers, defining monocyte-derived dendritic cells arising under inflammatory differentiation
Rationale DOI: https://doi.org/10.1016/j.cell.2019.06.029

Set of Labels Description: Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
Annotation Method: both
Algorithm Name: scIB
Algorithm Version: 1.2.1
Algorithm URL: https://github.com/theislab/scib