CD4 Memory
Ontology Term
- CD4-positive, alpha-beta memory T cellCL:0000897
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.- CD4 memory T cells, CD4 Tmem
Category
Class of which the cell type is a subclass.- CD4-positive, alpha-beta T cellCL:0000624
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.- —
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.- IL32, MAF
Rationale
- When CD4 celltypes show no clear evidence of Treg, Naive, or Th states, but contain a clear interleukin, MAF, and differentiated signal, we annotate them as CD4 Memory
Inherited from hgca_celltype_v1
- Set of Labels Description
- Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
- Annotation Method
- both
- Algorithm Name
- scIB
- Algorithm Version
- 1.2.1
- Algorithm URL
- https://github.com/theislab/scib
