Healthy and adjacent-to-disease control data from 27 gut single-cell RNAseq datasets were collected and integrated to form v1 of the Human Gut Cell Atlas
- Dataset Type
- Integrated. The file includes an integrated collection of datasets.
- Total Cells
- 944,502
- assay
- 10x 3' v3 (536,975 cells)10x 3' v2 (248,348 cells)10x 5' v1 (95,669 cells)10x 5' v2 (42,641 cells)10x 5' v3 (20,869 cells)
- disease
- normal (738,005 cells)Crohn disease (124,961 cells)colorectal cancer (26,020 cells)digestive system disorder (17,704 cells)enteritis (14,888 cells)adenocarcinoma (12,508 cells)polyposis (7,535 cells)neuroendocrine carcinoma (2,775 cells)cystic fibrosis associated meconium ileus (61 cells)necrotizing enterocolitis (45 cells)
- organism
- Homo sapiens
- tissue
- ileum (407,766 cells)jejunum (192,459 cells)colon (137,880 cells)ascending colon (104,261 cells)gastrointestinal system mesentery (26,422 cells)sigmoid colon (17,045 cells)transverse colon (16,948 cells)duodenum (12,777 cells)caecum (12,612 cells)rectum (9,911 cells)small intestine (2,732 cells)descending colon (2,705 cells)vermiform appendix (984 cells)
