• v4 Integrated Human Gut Cell Atlas

Memory B

Ontology Term

memory B cellCL:0000787

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

memory B cell, Bmem

Category

Class of which the cell type is a subclass.

B cellCL:0000236

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

—

Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CD69, SELL, CD27, HLA-DRA

Canonical Marker Genes

CD27, CD80, CD86

Rationale

CD27, HLA-DRA, SELL, and CD69 separated memory B cells from other B subsets

Inherited from hgca_celltype_v1

Set of Labels Description

Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.

Annotation Method

both

Algorithm Name

scIB

Algorithm Version

1.2.1

Algorithm URL

https://github.com/theislab/scib