Human Gut Cell Atlas (HGCA) v1 - Stromal Lineage

Post Arteriole Capillary Endothelial (PAC)

Ontology Term

post-arteriole capillary cellCL:4047029

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

capillary endothelial cellCL:0002144

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

—

Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

RGCC, FCN3

Canonical Marker Genes

RGCC, FCN3, RBP7

Rationale

RGCC and FCN3, distinguishing it from pre venule capillaries and venules in gut vasculature.

Inherited from hgca_celltype_v1

Set of Labels Description

Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.

Annotation Method

both

Algorithm Name

scIB

Algorithm Version

1.2.1

Algorithm URL

https://github.com/theislab/scib