Human Gut Cell Atlas (HGCA) v1 - Stromal Lineage

Angiogenic Pericytes

Ontology Term: angiogenic pericyteCL:4047012
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: pericyteCL:0000669
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: HIGD1B
Canonical Marker Genes: HIGD1B, KDR, COL4A1
Negative Marker Genes Genes expected to be absent, or expressed at a notably low level, in these cells, and whose absence supports the assignment of this cell annotation.: —
Rationale: HIGD1B expression marks pericytes engaged in vascular sprouting and angiogenesis
Rationale DOI: https://doi.org/10.1038/s41586-021-03852-1

Set of Labels Description: Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
Annotation Method: both
Algorithm Name: scIB
Algorithm Version: 1.2.1
Algorithm URL: https://github.com/theislab/scib