Healthy and adjacent-to-disease control data from 27 gut single-cell RNAseq datasets were collected and integrated to form v1 of the Human Gut Cell Atlas epithelial lineage
- Dataset Type
- Integrated. The file includes an integrated collection of datasets.
- Total Cells
- 269,927
- assay
- 10x 3' v3 (187,984 cells)10x 3' v2 (75,244 cells)10x 5' v1 (5,341 cells)10x 5' v2 (1,216 cells)10x 5' v3 (142 cells)
- disease
- normal (214,526 cells)Crohn disease (36,635 cells)adenocarcinoma (12,395 cells)colorectal cancer (2,909 cells)neuroendocrine carcinoma (2,775 cells)digestive system disorder (642 cells)enteritis (45 cells)
- organism
- Homo sapiens
- tissue
- ileum (176,067 cells)ascending colon (53,614 cells)rectum (7,357 cells)duodenum (6,813 cells)transverse colon (5,881 cells)sigmoid colon (5,551 cells)colon (5,448 cells)jejunum (3,925 cells)descending colon (2,102 cells)small intestine (1,907 cells)caecum (1,164 cells)vermiform appendix (98 cells)
