Healthy and adjacent-to-disease control data from 27 gut single-cell RNAseq datasets were collected and integrated to form v1 of the Human Gut Cell Atlas
- Dataset Type
- Integrated. The file includes an integrated collection of datasets.
- Total Cells
- 944,390
- assay
- 10x 3' v3 (536,911 cells)10x 3' v2 (248,306 cells)10x 5' v1 (95,663 cells)10x 5' v2 (42,641 cells)10x 5' v3 (20,869 cells)
- disease
- normal (737,899 cells)Crohn disease (124,957 cells)colorectal cancer (26,019 cells)digestive system disorder (17,703 cells)enteritis (14,888 cells)adenocarcinoma (12,508 cells)polyposis (7,535 cells)neuroendocrine carcinoma (2,775 cells)cystic fibrosis associated meconium ileus (61 cells)necrotizing enterocolitis (45 cells)
- organism
- Homo sapiens
- tissue
- ileum (405,118 cells)jejunum (192,459 cells)colon (137,880 cells)ascending colon (104,227 cells)gastrointestinal system mesentery (26,422 cells)sigmoid colon (17,044 cells)transverse colon (16,948 cells)duodenum (12,776 cells)caecum (12,612 cells)rectum (12,483 cells)small intestine (2,732 cells)descending colon (2,705 cells)vermiform appendix (984 cells)
