• v1 Human and Mammalian Brain Atlas: Basal Ganglia
• HMBA Consensus Basal Ganglia Atlas: Interneurons

Summary

Interneurons

Metadata

Dataset Type

Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.

Total Cells

217,240

organism

Macaca mulatta (78,343 cells)Homo sapiens (77,527 cells)Callithrix jacchus (61,370 cells)

tissue

brain

assay

10x multiome

disease

normal

Cell Labels

Neighborhood

Description

Cell annotation set for Neighborhood

Annotation Method

manual

Cell Labels (3)

Cells (217,240)

Subpallium GABA

190,655

Glut Sero Dopa

25,540

Subpallium GABA-Glut

1,045

Class

Description

Cell annotation set for Class

Annotation Method

manual

Cell Labels (6)

Cells (217,240)

CN MGE GABA

103,385

F M GABA

56,595

CN CGE GABA

28,688

F M Glut

25,540

Cx GABA

1,987

CN GABA-Glut

1,045

Subclass

Description

Cell annotation set for Subclass

Annotation Method

manual

Cell Labels (17)

Cells (217,240)

CN ST18 GABA

64,046

F GABA

22,660

CN VIP GABA

18,572

CN LHX8 GABA

17,041

STR RSPO2 GABA

16,928

F Glut

13,025

F M Glut

12,515

STR SST-CHODL GABA

10,375

F M GATA3 GABA

10,372

CN LAMP5-CXCL14 GABA

10,116

CN LAMP5-LHX6 GABA

6,285

CN Cholinergic GABA

4,966

Group

Description

Cell annotation set for Group

Annotation Method

manual

Cell Labels (30)

Cells (217,240)

STR FS PTHLH-PVALB GABA

31,963

STR TAC3-PLPP4 GABA

27,484

VIP GABA

18,572

ZI-HTH GABA

14,316

VTR-HTH Glut

12,515

STR SST-CHODL GABA

10,375

LAMP5-CXCL14 GABA

10,116

GPe-NDB-SI LHX6-LHX8-GBX1 GABA

10,096

STR SST-RSPO2 GABA

9,846

STH PVALB-PITX2 Glut

8,054

AMY-SLEA-BNST GABA

7,677

STR LYPD6-RSPO2 GABA

7,082

cluster_id

Description

Cell annotation set for cluster_id

Annotation Method

manual

Cell Labels (708)

Cells (217,240)

Human-21

13,930

Macaque-251

9,358

Human-42

5,439

Macaque-125

4,248

Human-40

3,695

Macaque-126

3,060

Human-355

2,471

Human-44

2,467

Marmoset-278

2,145

Marmoset-140

2,108

Human-521_1

1,966

Human-62

1,834