Cell Annotation Platform

v1 A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, 05 OB-IMN GABA

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An effort by the Villani, Kharchenko, Gehlenborg, Theis, Marioni, and Regev labs.

Whole Mouse Brain Taxonomy, 05 OB-IMN GABA

Main

Cell Metadata

Summary

Olfactory-bulb/immature GABAergic neurons

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 107,502
organism: Mus musculus
disease: normal
assay: 10x 3' v3 (53,751 cells)10x 3' v2 (53,751 cells)
tissue: olfactory cortex (101,347 cells)striatum (4,493 cells)neocortex (785 cells)cerebral cortex (438 cells)hippocampal formation (231 cells)pallidum (199 cells)dorsal plus ventral thalamus (4 cells)hypothalamus (2 cells)midbrain (2 cells)pons (1 cells)

Cell Labels

class plot preview

107,502

cluster plot preview

0537 OB-in Frmd7 Gaba_1

12,411

0548 OB-in Frmd7 Gaba_2

8,143

0540 OB-in Frmd7 Gaba_1

8,074

0542 OB-in Frmd7 Gaba_2

6,223

0543 OB-in Frmd7 Gaba_2

4,720

0545 OB-in Frmd7 Gaba_2

4,599

0533 OB-in Frmd7 Gaba_1

4,266

0544 OB-in Frmd7 Gaba_2

4,229

0612 OB-STR-CTX Inh IMN_4

3,464

0547 OB-in Frmd7 Gaba_2

3,129

0538 OB-in Frmd7 Gaba_1

3,106

0539 OB-in Frmd7 Gaba_1

2,657

0536 OB-in Frmd7 Gaba_1

2,342

0532 OB-in Frmd7 Gaba_1

1,970

0535 OB-in Frmd7 Gaba_1

1,721

0549 OB-in Frmd7 Gaba_2

1,662

0605 OB-STR-CTX Inh IMN_2

1,488

0530 OB Trdn Gaba_2

1,441

0571 OB-out Frmd7 Gaba_1

1,372

0546 OB-in Frmd7 Gaba_2

1,343

0569 OB-out Frmd7 Gaba_1

1,260

0558 OB-in Frmd7 Gaba_4

1,242

0572 OB-out Frmd7 Gaba_1

1,131

0531 OB Trdn Gaba_2

1,070

0529 OB Trdn Gaba_1

996

0534 OB-in Frmd7 Gaba_1

919

0589 OB Dopa-Gaba_1

907

0584 OB Dopa-Gaba_1

887

0582 OB Dopa-Gaba_1

871

0541 OB-in Frmd7 Gaba_1

833

0566 OB-in Frmd7 Gaba_7

739

0553 OB-in Frmd7 Gaba_3

721

0607 OB-STR-CTX Inh IMN_2

703

0526 OB Meis2 Thsd7b Gaba_4

678

0583 OB Dopa-Gaba_1

667

0609 OB-STR-CTX Inh IMN_3

651

0603 OB-STR-CTX Inh IMN_2

601

0573 OB-out Frmd7 Gaba_1

532

0587 OB Dopa-Gaba_1

529

0562 OB-in Frmd7 Gaba_5

510

0552 OB-in Frmd7 Gaba_3

490

0559 OB-in Frmd7 Gaba_5

470

0564 OB-in Frmd7 Gaba_5

457

0568 OB-out Frmd7 Gaba_1

455

0600 OB-STR-CTX Inh IMN_1

422

0567 OB-in Frmd7 Gaba_8

403

0550 OB-in Frmd7 Gaba_3

398

0556 OB-in Frmd7 Gaba_4

384

0574 OB-out Frmd7 Gaba_1

356

0614 OB-STR-CTX Inh IMN_4

337

0561 OB-in Frmd7 Gaba_5

319

0554 OB-in Frmd7 Gaba_3

310

0615 OB-STR-CTX Inh IMN_4

306

0522 OB Meis2 Thsd7b Gaba_2

298

0570 OB-out Frmd7 Gaba_1

260

0560 OB-in Frmd7 Gaba_5

258

0586 OB Dopa-Gaba_1

254

0604 OB-STR-CTX Inh IMN_2

253

0597 OB-STR-CTX Inh IMN_1

253

0518 OB Meis2 Thsd7b Gaba_1

246

0594 OB-STR-CTX Inh IMN_1

240

0601 OB-STR-CTX Inh IMN_2

236

0580 OB-mi Frmd7 Gaba_1

232

0618 OB-STR-CTX Inh IMN_5

224

0598 OB-STR-CTX Inh IMN_1

221

0519 OB Meis2 Thsd7b Gaba_1

217

0565 OB-in Frmd7 Gaba_6

216

0579 OB-mi Frmd7 Gaba_1

210

0578 OB-out Frmd7 Gaba_3

196

0557 OB-in Frmd7 Gaba_4

193

0525 OB Meis2 Thsd7b Gaba_3

193

0595 OB-STR-CTX Inh IMN_1

180

0613 OB-STR-CTX Inh IMN_4

173

0577 OB-out Frmd7 Gaba_2

172

0581 OB-mi Frmd7 Gaba_1

169

0575 OB-out Frmd7 Gaba_2

158

0563 OB-in Frmd7 Gaba_5

158

0524 OB Meis2 Thsd7b Gaba_2

157

0590 OB Dopa-Gaba_2

157

0599 OB-STR-CTX Inh IMN_1

156

0527 OB Meis2 Thsd7b Gaba_5

148

0551 OB-in Frmd7 Gaba_3

144

0592 OB Dopa-Gaba_4

138

0520 OB Meis2 Thsd7b Gaba_1

134

0606 OB-STR-CTX Inh IMN_2

126

0585 OB Dopa-Gaba_1

119

0596 OB-STR-CTX Inh IMN_1

113

0576 OB-out Frmd7 Gaba_2

105

0611 OB-STR-CTX Inh IMN_4

104

0619 OB-STR-CTX Inh IMN_5

89

0610 OB-STR-CTX Inh IMN_3

82

0591 OB Dopa-Gaba_3

71

0588 OB Dopa-Gaba_1

62

0620 OB-STR-CTX Inh IMN_5

58

0555 OB-in Frmd7 Gaba_4

57

0617 OB-STR-CTX Inh IMN_5

54

0602 OB-STR-CTX Inh IMN_2

52

0593 OB-STR-CTX Inh IMN_1

43

0608 OB-STR-CTX Inh IMN_3

41

0523 OB Meis2 Thsd7b Gaba_2

38

0528 OB Meis2 Thsd7b Gaba_5

35

0622 OB-STR-CTX Inh IMN_7

32

0616 OB-STR-CTX Inh IMN_5

23

0621 OB-STR-CTX Inh IMN_6

21

0521 OB Meis2 Thsd7b Gaba_2

19

subclass plot preview

041 OB-in Frmd7 Gaba

79,816

045 OB-STR-CTX Inh IMN

10,746

042 OB-out Frmd7 Gaba

5,997

044 OB Dopa-Gaba

4,662

040 OB Trdn Gaba

3,507

039 OB Meis2 Thsd7b Gaba

2,163

043 OB-mi Frmd7 Gaba

611

supertype plot preview

0150 OB-in Frmd7 Gaba_1

38,299

0151 OB-in Frmd7 Gaba_2

34,048

0158 OB-out Frmd7 Gaba_1

5,366

0169 OB-STR-CTX Inh IMN_4

4,384

0162 OB Dopa-Gaba_1

4,296

0167 OB-STR-CTX Inh IMN_2

3,459

0149 OB Trdn Gaba_2

2,511

0154 OB-in Frmd7 Gaba_5

2,172

0152 OB-in Frmd7 Gaba_3

2,063

0153 OB-in Frmd7 Gaba_4

1,876

0166 OB-STR-CTX Inh IMN_1

1,628

0148 OB Trdn Gaba_1

996

0168 OB-STR-CTX Inh IMN_3

774

0156 OB-in Frmd7 Gaba_7

739

0146 OB Meis2 Thsd7b Gaba_4

678

0161 OB-mi Frmd7 Gaba_1

611

0143 OB Meis2 Thsd7b Gaba_1

597

0144 OB Meis2 Thsd7b Gaba_2

512

0170 OB-STR-CTX Inh IMN_5

448

0159 OB-out Frmd7 Gaba_2

435

0157 OB-in Frmd7 Gaba_8

403

0155 OB-in Frmd7 Gaba_6

216

0160 OB-out Frmd7 Gaba_3

196

0145 OB Meis2 Thsd7b Gaba_3

193

0147 OB Meis2 Thsd7b Gaba_5

183

0163 OB Dopa-Gaba_2

157

0165 OB Dopa-Gaba_4

138

0164 OB Dopa-Gaba_3

71

0172 OB-STR-CTX Inh IMN_7

32

0171 OB-STR-CTX Inh IMN_6

21