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A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, 10 LSX GABA
Whole Mouse Brain Taxonomy, 10 LSX GABA
Main
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Cell Metadata
class
subclass
supertype
cluster
Summary
Lateral septal complex GABAergic neurons
Metadata
Dataset Type
Integrated. The file includes an integrated collection of datasets.
Total Cells
30,313
organism
Mus musculus
disease
normal
assay
10x 3' v2
(15,157 cells)
10x 3' v3
(15,156 cells)
tissue
striatum
(29,175 cells)
pallidum
(932 cells)
hypothalamus
(141 cells)
olfactory cortex
(39 cells)
dorsal plus ventral thalamus
(24 cells)
neocortex
(2 cells)
Cell Labels
class (1)
30,313 cells
10 LSX GABA
30,313
subclass (6)
30,313 cells
069 LSX Nkx2-1 Gaba
7,877
070 LSX Prdm12 Slit2 Gaba
7,843
071 LSX Prdm12 Zeb2 Gaba
6,587
068 LSX Otx2 Gaba
4,379
072 LSX Sall3 Lmo1 Gaba
2,513
067 LSX Sall3 Pax6 Gaba
1,114
supertype (38)
30,313 cells
0317 LSX Prdm12 Slit2 Gaba_1
2,780
0326 LSX Prdm12 Zeb2 Gaba_1
2,707
0318 LSX Prdm12 Slit2 Gaba_2
1,799
0307 LSX Nkx2-1 Gaba_2
1,791
0303 LSX Otx2 Gaba_3
1,550
0327 LSX Prdm12 Zeb2 Gaba_2
1,271
0319 LSX Prdm12 Slit2 Gaba_3
1,237
0302 LSX Otx2 Gaba_2
1,154
0309 LSX Nkx2-1 Gaba_4
1,112
0308 LSX Nkx2-1 Gaba_3
1,108
0329 LSX Prdm12 Zeb2 Gaba_4
964
0332 LSX Sall3 Lmo1 Gaba_2
919
0310 LSX Nkx2-1 Gaba_5
881
0301 LSX Otx2 Gaba_1
849
0330 LSX Prdm12 Zeb2 Gaba_5
831
0328 LSX Prdm12 Zeb2 Gaba_3
814
0300 LSX Sall3 Pax6 Gaba_2
761
0321 LSX Prdm12 Slit2 Gaba_5
680
0316 LSX Nkx2-1 Gaba_11
602
0324 LSX Prdm12 Slit2 Gaba_8
574
0336 LSX Sall3 Lmo1 Gaba_6
522
0314 LSX Nkx2-1 Gaba_9
507
0311 LSX Nkx2-1 Gaba_6
474
0331 LSX Sall3 Lmo1 Gaba_1
464
0315 LSX Nkx2-1 Gaba_10
461
0312 LSX Nkx2-1 Gaba_7
435
0304 LSX Otx2 Gaba_4
428
0305 LSX Otx2 Gaba_5
398
0333 LSX Sall3 Lmo1 Gaba_3
365
0299 LSX Sall3 Pax6 Gaba_1
353
0306 LSX Nkx2-1 Gaba_1
344
0320 LSX Prdm12 Slit2 Gaba_4
302
0323 LSX Prdm12 Slit2 Gaba_7
294
0335 LSX Sall3 Lmo1 Gaba_5
181
0313 LSX Nkx2-1 Gaba_8
162
0325 LSX Prdm12 Slit2 Gaba_9
104
0322 LSX Prdm12 Slit2 Gaba_6
73
0334 LSX Sall3 Lmo1 Gaba_4
62
cluster (146)
30,313 cells
1152 LSX Prdm12 Zeb2 Gaba_1
1,047
1116 LSX Prdm12 Slit2 Gaba_1
944
1167 LSX Prdm12 Zeb2 Gaba_4
904
1054 LSX Otx2 Gaba_2
866
1159 LSX Prdm12 Zeb2 Gaba_2
808
1115 LSX Prdm12 Slit2 Gaba_1
733
1051 LSX Otx2 Gaba_1
627
1156 LSX Prdm12 Zeb2 Gaba_1
625
1096 LSX Nkx2-1 Gaba_4
575
1147 LSX Prdm12 Slit2 Gaba_8
574
1126 LSX Prdm12 Slit2 Gaba_2
560
1087 LSX Nkx2-1 Gaba_2
539
1114 LSX Nkx2-1 Gaba_11
520
1111 LSX Nkx2-1 Gaba_9
507
1176 LSX Sall3 Lmo1 Gaba_2
474
1112 LSX Nkx2-1 Gaba_10
461
1124 LSX Prdm12 Slit2 Gaba_2
460
1089 LSX Nkx2-1 Gaba_3
401
1174 LSX Sall3 Lmo1 Gaba_1
390
1121 LSX Prdm12 Slit2 Gaba_1
389
1155 LSX Prdm12 Zeb2 Gaba_1
361
1165 LSX Prdm12 Zeb2 Gaba_3
343
1131 LSX Prdm12 Slit2 Gaba_3
340
1164 LSX Prdm12 Zeb2 Gaba_3
332
1102 LSX Nkx2-1 Gaba_6
325
1045 LSX Sall3 Pax6 Gaba_2
321
1117 LSX Prdm12 Slit2 Gaba_1
317
1185 LSX Sall3 Lmo1 Gaba_6
316
1098 LSX Nkx2-1 Gaba_5
299
1088 LSX Nkx2-1 Gaba_3
294
1160 LSX Prdm12 Zeb2 Gaba_2
280
1061 LSX Otx2 Gaba_3
275
1042 LSX Sall3 Pax6 Gaba_1
273
1095 LSX Nkx2-1 Gaba_4
264
1058 LSX Otx2 Gaba_3
263
1106 LSX Nkx2-1 Gaba_7
257
1062 LSX Otx2 Gaba_3
256
1146 LSX Prdm12 Slit2 Gaba_7
255
1169 LSX Prdm12 Zeb2 Gaba_5
250
1077 LSX Nkx2-1 Gaba_2
239
1091 LSX Nkx2-1 Gaba_3
237
1097 LSX Nkx2-1 Gaba_5
233
1093 LSX Nkx2-1 Gaba_4
232
1139 LSX Prdm12 Slit2 Gaba_5
230
1132 LSX Prdm12 Slit2 Gaba_3
225
1050 LSX Otx2 Gaba_1
222
1080 LSX Nkx2-1 Gaba_2
222
1052 LSX Otx2 Gaba_2
214
1172 LSX Prdm12 Zeb2 Gaba_5
211
1134 LSX Prdm12 Slit2 Gaba_3
208
1125 LSX Prdm12 Slit2 Gaba_2
207
1149 LSX Prdm12 Zeb2 Gaba_1
205
1141 LSX Prdm12 Slit2 Gaba_5
199
1075 LSX Nkx2-1 Gaba_1
198
1066 LSX Otx2 Gaba_4
194
1085 LSX Nkx2-1 Gaba_2
193
1057 LSX Otx2 Gaba_3
191
1180 LSX Sall3 Lmo1 Gaba_3
189
1140 LSX Prdm12 Slit2 Gaba_5
189
1135 LSX Prdm12 Slit2 Gaba_3
188
1128 LSX Prdm12 Slit2 Gaba_2
188
1133 LSX Prdm12 Slit2 Gaba_3
188
1056 LSX Otx2 Gaba_3
181
1099 LSX Nkx2-1 Gaba_5
179
1181 LSX Sall3 Lmo1 Gaba_3
176
1129 LSX Prdm12 Slit2 Gaba_2
173
1100 LSX Nkx2-1 Gaba_5
170
1119 LSX Prdm12 Slit2 Gaba_1
170
1127 LSX Prdm12 Slit2 Gaba_2
166
1178 LSX Sall3 Lmo1 Gaba_2
164
1186 LSX Sall3 Lmo1 Gaba_6
162
1138 LSX Prdm12 Slit2 Gaba_4
160
1179 LSX Sall3 Lmo1 Gaba_2
158
1059 LSX Otx2 Gaba_3
153
1074 LSX Nkx2-1 Gaba_1
146
1171 LSX Prdm12 Zeb2 Gaba_5
145
1048 LSX Sall3 Pax6 Gaba_2
142
1137 LSX Prdm12 Slit2 Gaba_4
142
1158 LSX Prdm12 Zeb2 Gaba_2
141
1069 LSX Otx2 Gaba_5
129
1153 LSX Prdm12 Zeb2 Gaba_1
129
1044 LSX Sall3 Pax6 Gaba_2
127
1177 LSX Sall3 Lmo1 Gaba_2
123
1154 LSX Prdm12 Zeb2 Gaba_1
122
1184 LSX Sall3 Lmo1 Gaba_5
120
1079 LSX Nkx2-1 Gaba_2
115
1092 LSX Nkx2-1 Gaba_3
115
1060 LSX Otx2 Gaba_3
113
1078 LSX Nkx2-1 Gaba_2
106
1105 LSX Nkx2-1 Gaba_7
106
1148 LSX Prdm12 Slit2 Gaba_9
104
1170 LSX Prdm12 Zeb2 Gaba_5
103
1157 LSX Prdm12 Zeb2 Gaba_1
99
1101 LSX Nkx2-1 Gaba_6
93
1136 LSX Prdm12 Slit2 Gaba_3
88
1084 LSX Nkx2-1 Gaba_2
87
1162 LSX Prdm12 Zeb2 Gaba_3
84
1049 LSX Sall3 Pax6 Gaba_2
84
1065 LSX Otx2 Gaba_4
83
1113 LSX Nkx2-1 Gaba_11
82
1063 LSX Otx2 Gaba_3
81
1043 LSX Sall3 Pax6 Gaba_1
80
1070 LSX Otx2 Gaba_5
79
1053 LSX Otx2 Gaba_2
74
1175 LSX Sall3 Lmo1 Gaba_1
74
1150 LSX Prdm12 Zeb2 Gaba_1
74
1064 LSX Otx2 Gaba_4
69
1082 LSX Nkx2-1 Gaba_2
67
1068 LSX Otx2 Gaba_4
67
1073 LSX Otx2 Gaba_5
66
1118 LSX Prdm12 Slit2 Gaba_1
66
1071 LSX Otx2 Gaba_5
65
1168 LSX Prdm12 Zeb2 Gaba_5
64
1086 LSX Nkx2-1 Gaba_2
64
1182 LSX Sall3 Lmo1 Gaba_4
62
1142 LSX Prdm12 Slit2 Gaba_5
62
1090 LSX Nkx2-1 Gaba_3
61
1120 LSX Prdm12 Slit2 Gaba_1
61
1183 LSX Sall3 Lmo1 Gaba_5
61
1166 LSX Prdm12 Zeb2 Gaba_4
60
1072 LSX Otx2 Gaba_5
59
1173 LSX Prdm12 Zeb2 Gaba_5
58
1103 LSX Nkx2-1 Gaba_6
56
1110 LSX Nkx2-1 Gaba_8
56
1163 LSX Prdm12 Zeb2 Gaba_3
55
1083 LSX Nkx2-1 Gaba_2
54
1081 LSX Nkx2-1 Gaba_2
54
1122 LSX Prdm12 Slit2 Gaba_1
53
1109 LSX Nkx2-1 Gaba_8
53
1108 LSX Nkx2-1 Gaba_8
53
1076 LSX Nkx2-1 Gaba_2
51
1047 LSX Sall3 Pax6 Gaba_2
47
1123 LSX Prdm12 Slit2 Gaba_1
47
1151 LSX Prdm12 Zeb2 Gaba_1
45
1130 LSX Prdm12 Slit2 Gaba_2
45
1187 LSX Sall3 Lmo1 Gaba_6
44
1143 LSX Prdm12 Slit2 Gaba_6
44
1161 LSX Prdm12 Zeb2 Gaba_2
42
1094 LSX Nkx2-1 Gaba_4
41
1107 LSX Nkx2-1 Gaba_7
41
1046 LSX Sall3 Pax6 Gaba_2
40
1145 LSX Prdm12 Slit2 Gaba_7
39
1055 LSX Otx2 Gaba_3
37
1104 LSX Nkx2-1 Gaba_7
31
1144 LSX Prdm12 Slit2 Gaba_6
29
1067 LSX Otx2 Gaba_4
15
Molecular Data
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