• v1 A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Summary

Near and corticothalamic projecting cortical glutamatergic neurons

Metadata

Dataset Type

Integrated. The file includes an integrated collection of datasets.

Total Cells

310,198

organism

Mus musculus

tissue

neocortex (262,106 cells)hippocampal formation (39,596 cells)cerebral cortex (6,650 cells)olfactory cortex (1,479 cells)striatum (361 cells)dorsal plus ventral thalamus (4 cells)pallidum (2 cells)

assay

10x 3' v2 (155,099 cells)10x 3' v3 (155,099 cells)

disease

normal

Cell Labels

class (1)

310,198 cells

02 NP-CT-L6b Glut

310,198

subclass (8)

310,198 cells

030 L6 CT CTX Glut

201,912

032 L5 NP CTX Glut

43,739

028 L6b/CT ENT Glut

26,788

029 L6b CTX Glut

20,098

031 CT SUB Glut

7,816

027 L6b EPd Glut

4,060

034 NP PPP Glut

3,029

033 NP SUB Glut

2,756

supertype (27)

310,198 cells

0114 L6 CT CTX Glut_1

76,047

0115 L6 CT CTX Glut_2

68,930

0118 L6 CT CTX Glut_5

35,459

0123 L5 NP CTX Glut_2

24,479

0109 L6b/CT ENT Glut_4

15,169

0116 L6 CT CTX Glut_3

14,692

0124 L5 NP CTX Glut_3

13,915

0110 L6b CTX Glut_1

10,264

0106 L6b/CT ENT Glut_1

8,083

0111 L6b CTX Glut_2

5,499

0120 CT SUB Glut_1

5,449

0117 L6 CT CTX Glut_4

4,562

0112 L6b CTX Glut_3

3,637

0129 NP PPP Glut_1

3,029

0125 L5 NP CTX Glut_4

2,521

0128 NP SUB Glut_2

2,445

0121 CT SUB Glut_2

2,367

0107 L6b/CT ENT Glut_2

2,247

0119 L6 CT CTX Glut_6

2,222

0122 L5 NP CTX Glut_1

2,034

0104 L6b EPd Glut_2

1,875

0105 L6b EPd Glut_3

1,756

0108 L6b/CT ENT Glut_3

1,289

0126 L5 NP CTX Glut_5

790

0113 L6b CTX Glut_4

698

0103 L6b EPd Glut_1

429

0127 NP SUB Glut_1

311

cluster (83)

310,198 cells

0442 L6 CT CTX Glut_2

32,875

0439 L6 CT CTX Glut_1

31,772

0443 L6 CT CTX Glut_2

30,942

0436 L6 CT CTX Glut_1

30,379

0455 L6 CT CTX Glut_5

25,460

0421 L6b/CT ENT Glut_4

13,773

0466 L5 NP CTX Glut_2

10,402

0437 L6 CT CTX Glut_1

8,833

0445 L6 CT CTX Glut_3

8,418

0464 L5 NP CTX Glut_2

8,077

0425 L6b CTX Glut_1

7,046

0468 L5 NP CTX Glut_3

6,263

0458 CT SUB Glut_1

5,449

0465 L5 NP CTX Glut_2

5,394

0444 L6 CT CTX Glut_2

4,935

0450 L6 CT CTX Glut_4

4,562

0469 L5 NP CTX Glut_3

4,369

0412 L6b/CT ENT Glut_1

3,784

0440 L6 CT CTX Glut_1

3,100

0429 L6b CTX Glut_2

2,963

0454 L6 CT CTX Glut_5

2,900

0470 L5 NP CTX Glut_3

2,810

0456 L6 CT CTX Glut_5

2,734

0449 L6 CT CTX Glut_3

2,725

0410 L6b/CT ENT Glut_1

2,455

0457 L6 CT CTX Glut_6

2,222

0453 L6 CT CTX Glut_5

2,076

0426 L6b CTX Glut_1

2,038

0484 NP PPP Glut_1

2,024

0438 L6 CT CTX Glut_1

1,963

0452 L6 CT CTX Glut_5

1,850

0446 L6 CT CTX Glut_3

1,836

0460 CT SUB Glut_2

1,761

0473 L5 NP CTX Glut_4

1,734

0430 L6b CTX Glut_2

1,555

0413 L6b/CT ENT Glut_1

1,315

0447 L6 CT CTX Glut_3

1,249

0433 L6b CTX Glut_3

1,236

0424 L6b CTX Glut_1

1,180

0406 L6b EPd Glut_2

1,111

0432 L6b CTX Glut_3

1,107

0415 L6b/CT ENT Glut_2

1,048

0422 L6b/CT ENT Glut_4

1,020

0463 L5 NP CTX Glut_1

960

0485 NP PPP Glut_1

804

0482 NP SUB Glut_2

774

0405 L6b EPd Glut_2

764

0431 L6b CTX Glut_3

730

0407 L6b EPd Glut_3

708

0435 L6b CTX Glut_4

698

0408 L6b EPd Glut_3

687

0414 L6b/CT ENT Glut_2

674

0462 L5 NP CTX Glut_1

608

0467 L5 NP CTX Glut_2

606

0459 CT SUB Glut_2

606

0480 NP SUB Glut_2

582

0481 NP SUB Glut_2

573

0434 L6b CTX Glut_3

564

0419 L6b/CT ENT Glut_3

543

0411 L6b/CT ENT Glut_1

529

0474 L5 NP CTX Glut_4

522

0427 L6b CTX Glut_2

521

0479 NP SUB Glut_2

516

0471 L5 NP CTX Glut_3

473

0461 L5 NP CTX Glut_1

466

0448 L6 CT CTX Glut_3

464

0428 L6b CTX Glut_2

460

0451 L6 CT CTX Glut_5

439

0476 L5 NP CTX Glut_5

424

0417 L6b/CT ENT Glut_2

406

0420 L6b/CT ENT Glut_3

401

0423 L6b/CT ENT Glut_4

376

0475 L5 NP CTX Glut_5

366

0409 L6b EPd Glut_3

361

0418 L6b/CT ENT Glut_3

345

0472 L5 NP CTX Glut_4

265

0477 NP SUB Glut_1

255

0404 L6b EPd Glut_1

249

0483 NP PPP Glut_1

201

0403 L6b EPd Glut_1

180

0441 L6 CT CTX Glut_2

178

0416 L6b/CT ENT Glut_2

119

0478 NP SUB Glut_1

56