Cell Annotation Platform
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v1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons | CAP
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Main
Summary
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Cell Metadata
cluster
subclass
class
supertype
Molecular Data
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0233 STR Prox1 Lhx6 Gaba_1
Full Name
0233 STR Prox1 Lhx6 Gaba_1
Closest Ontology Term
medial ganglionic eminence derived interneuron
CL:4023063
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
interneuron
CL:0000099
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
Moxd1
,
St18
,
Sytl5
,
Cplx3
Canonical Marker Genes
unknown
Rationale
NA
Inherited from supertype
Set of Labels Description
The second finest level of cell type definition in the mouse whole brain taxonomy. All cells within a cluster belong to the same supertype. Supertype groups together similar clusters.
Annotation Method
manual