Cell Annotation Platform
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v1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons | CAP
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Main
Summary
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Cell Metadata
cluster
subclass
class
supertype
Molecular Data
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0278 STR D2 Gaba_5
Full Name
0278 STR D2 Gaba_5
Closest Ontology Term
indirect pathway medium spiny neuron
CL:4023029
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
medium spiny neuron
CL:1001474
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
Sh3rf2
,
P2ry1
,
Myo3b
,
Crym
,
Drd2
Canonical Marker Genes
unknown
Rationale
NA
Inherited from supertype
Set of Labels Description
The second finest level of cell type definition in the mouse whole brain taxonomy. All cells within a cluster belong to the same supertype. Supertype groups together similar clusters.
Annotation Method
manual