Cell Annotation Platform
v1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
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Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Main
Summary
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Cell Metadata
cluster
subclass
class
supertype
0970 STR D2 Gaba_1
Full Name
0970 STR D2 Gaba_1
Closest Ontology Term
indirect pathway medium spiny neuron
CL:4023029
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
medium spiny neuron
CL:1001474
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
Adora2a
,
Gpr6
,
Nr2f1
,
Krt12
Canonical Marker Genes
unknown
Rationale
NA
Inherited from cluster
Set of Labels Description
The finest level of cell type definition in the mouse whole brain taxonomy. Cells within a cluster share similar characteristics and belong to the same supertype.
Annotation Method
manual
Molecular Data
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